PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G068400.5
Common NameB456_009G068400, LOC105768068
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 343aa    MW: 38672.6 Da    PI: 5.224
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G068400.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.7e-05327123
                        EEETTTTEEESSHHHHHHHHHH..T CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirt..H 23
                        y+C+ Cgk ++++  + +H+++  H
  Gorai.009G068400.5  3 YSCGVCGKGYRSSKAYSQHLKSraH 27
                        99******************98666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.743332IPR007087Zinc finger, C2H2
SuperFamilySSF576671.51E-5339No hitNo description
SMARTSM003550.19327IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280527IPR007087Zinc finger, C2H2
SuperFamilySSF576673.89E-8103217No hitNo description
PfamPF127562.7E-26117218IPR015880Zinc finger, C2H2-like
SMARTSM0035533166193IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MLYSCGVCGK GYRSSKAYSQ HLKSRAHIMQ ASQGTNHPQE VKAIIKPLPR RTVNKPPQPR  60
DRNDDESQDE WEEVDPEEEL VGQAANSLTH LNVTEDGAGD EMEEEEEEEE ELDPCCCFMC  120
DLEHDTIESC MVHMHKLHGF FIPDVEYLKD PEGLLTYLGL KVKRDFMCLY CNERCHPFAS  180
LEAVRKHMAA KGHCKVHYGD GDEEEEAELE EFYDYSSSYV DESGKQLVAA GDTGNSVELV  240
GGSELVITKR SDEGILSKTL GSREYMRYYR QKPRPSPANN MAITAALASR YRSMGIATVQ  300
SREQMVRMKV MKAMNRGGVE AMRTKVGVKN NVIRNLPKNV PY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5apn_y4e-18117308185389Cytoplasmic 60S subunit biogenesis factor REI
5apo_y3e-18117308164368CYTOPLASMIC 60S SUBUNIT BIOGENESIS FACTOR REI
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443253.10.0PREDICTED: zinc finger protein 622-like
RefseqXP_012443252.10.0PREDICTED: zinc finger protein 622-like
SwissprotQ8H1G51e-154REIL1_ARATH; Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1
TrEMBLA0A0D2TEY10.0A0A0D2TEY1_G
TrEMBLA0A0D2TKT00.0A0A0D2TKT0_G
STRINGVIT_04s0008g02540.t011e-173(Vitis vinifera)
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]